Alison F. Feder
I am an evolutionary biologist studying how adaptation proceeds in space and time. I'm currently a Miller Fellow with Oskar Hallatschek and Monty Slatkin in the Department of Integrative Biology at UC Berkeley. I received my PhD in biology at Stanford University advised by Dmitri Petrov.
- e-mail: email@example.com
Here are some of the projects I've worked on over the past several years, and you can find a current list of publications on Google scholar.
The clarifying role of time series data in the population genetics of HIV (2018) [pre-print]
Alison Feder, Pleuni Pennings, Dmitri Petrov
Rapid adaptation reveals structure in populations that are effectively panmictic under neutrality.
This is ongoing work with Pleuni Pennings, Dmitri Petrov and Joachim Hermisson
Within-patient HIV mutation frequencies reveal fitness costs of CpG dinucleotides, drastic amino acid changes and G->A mutations (2018) [paper]
Kristof Theys*, Alison Feder*, Maoz Gelbart*, Marion Hartl, Adi Stern, Pleuni Pennings
High resolution spatio-temporal assessment of SHIV evolution reveals a highly dynamic process within the host (2017) [paper,video abstract]
Alison Feder, Christopher Kline, Patricia Polacino, Mackenzie Cottrell, Angela Kashuba, Brandon Keele, Shiu-Lok Hu, Dmitri Petrov, Pleuni Pennings, Zandrea Ambrose
More effective drugs lead to harder selective sweeps in the evolution of drug resistance in HIV-1 (2016)
[paper, video abstract]
Alison Feder, Soo-Yon Rhee, Susan Holmes, Bob Shafer, Dmitri Petrov and Pleuni Pennings
The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens. (2016) [paper]
Ben Wilson*, Nandita Garud*, Alison Feder*, Zoe Assaf*, and Pleuni Pennings
Comparative analysis of derived mutations across human populations (2013) [MSc thesis]
Alison Feder (advised by Gil McVean)
Identifying Signatures of Selection in Genetic Time Series (2014) [paper]
Alison Feder*, Sergey Kryazhimskiy*, Joshua Plotkin
LDx: estimation of linkage disequilibrium from high-throughput pooled resequencing data. [paper, download LDx]
Alison Feder, Dmitri Petrov, Alan Bergland
Natural selection affects multiple aspects of genetic variation at putatively neutral sites across the human genome. [paper]
Kirk Lohmueller, Anders Albrechtsen, Yingrui Li, Su Yeon Kim, Thorfinn Korneliussen, Nicolas Vinckenbosch, Geng Tian, Emilia Huerta-Sanchez, Alison Feder, Niels Grarup, Torben Jorgensen, Tao Jiang, Daniel R. Witte, ... , Rasmus Nielsen
Estimating the bias incurred when estimating phylogenetic timescales with incorrect nucleotide substitution models
with Warren Ewens - Spring 2009
- Here's a seminar I gave at the Center for the Inference and
Dynamics of Infectious Disease (CIDID) at the Fred Hutch in September,
- Video abstract for 'A spatio-temporal assessment of simian/human immunodeficiency virus (SHIV) evolution reveals a highly dynamic process within the host':
- A Muller diagram I drew was featured
as part of the cover of Molecular Ecology's special issue on 'Detecting Selection in Natural Populations.'
- Video abstract for 'More efficient drugs lead to harder sweeps in the evolution of drug resistance in HIV-1':
- e-mail: firstname.lastname@example.org
371 Serra St.
Stanford, CA 94305-5020