Publications

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1. Ascensao JA, Denk J, Lok K, Yu Q, Wetmore KM, Hallatschek O. Rediversification following ecotype isolation reveals hidden adaptive potential. bioRxiv (2023). doi: 10.1101/2023.05.03.539206
2. Ascensao JA, Wetmore KM, Good BH, Arkin AP, Hallatschek O. Quantifying the local adaptive landscape of a nascent bacterial community. Nature Communications 14, 248 (2023). doi: 10.1038/s41467-022-35677-5
3. Yu Q, Ascensao JA*, Okada T*, COG-UK consortium, Boyd O, Volz E, Hallatschek O. Lineage frequency time series reveal elevated levels of genetic drift in SARS-CoV-2 transmission in England. bioRxiv (2022). doi: 10.1101/2022.11.21.517390
4. Ascensao JA*, Datta P*, Hancioglu B*, Sontag E*, Gennaro ML, Igoshin OA. Non-monotonic response to monotonic stimulus: regulation of glyoxylate shunt gene-expression dynamics in M. tuberculosis. PLoS Computational Biology (2016) 12: e1004741. doi: 10.1371/journal.pcbi.1004741
5. Ascensao JA*, Dolan ME*, Hill DP, Blake JA. Methodology for the inference of gene function from phenotype data. BMC Bioinformatics (2014) 15: 405. doi: 10.1186/s12859-014-0405-z

*equal contributions