- Ascensao JA, Lok K, Hallatschek O. Asynchronous abundance fluctuations can drive giant genotype frequency fluctuations. bioRxiv (2024). DOI | PDF
- Ascensao JA, Denk J, Lok K, Yu Q, Wetmore KM, Hallatschek O. Rediversification following ecotype isolation reveals hidden adaptive potential. Current Biology 34, 855-867 (2024). DOI | PDF
- See related dispatch article by W. Shoemaker
- Yu Q, Ascensao JA*, Okada T*, COG-UK consortium, Boyd O, Volz E, Hallatschek O. Lineage frequency time series reveal elevated levels of genetic drift in SARS-CoV-2 transmission in England. PLOS Pathogens (2024). DOI | PDF
- Ascensao JA, Wetmore KM, Good BH, Arkin AP, Hallatschek O. Quantifying the local adaptive landscape of a nascent bacterial community. Nature Communications 14, 248 (2023). DOI | PDF
- Ascensao JA*, Datta P*, Hancioglu B*, Sontag E*, Gennaro ML, Igoshin OA. Non-monotonic response to monotonic stimulus: regulation of glyoxylate shunt gene-expression dynamics in M. tuberculosis. PLOS Computational Biology (2016) 12: e1004741. DOI | PDF
- Ascensao JA*, Dolan ME*, Hill DP, Blake JA. Methodology for the inference of gene function from phenotype data. BMC Bioinformatics (2014) 15: 405. DOI | PDF
*equal contributions