Note: Only releases that a member of Mudhoney performed on has been included. As such, some releases by bands such as the Limp Richerds and the Fall-Outs have been left out.
| (no #) | Hair of the Future/Broke | Belltown | 1993 |
| SFTRI 336 | Ten Solid Rockin' Inches of Rock Solid Rock | Sympathy for the Record Industry | 1994 |
| SFTRI 233 | In-a-gadda-da-change | Sympathy for the Record Industry | 1993 | |
| Live My Way | Reprise | 10/24/95 |
| Pro-TD 7903 | Addicted to Noise Presents Reprise: The Next Generation | (Cardboard sleeve; lp-like inner sleeve) | Reprise | 1995 |
| Live My Way | In the Red | 10/24/95 |
| Live My Way | Reprise | 10/24/95 |
| Lowlife: The Seattle Underground Rock Album | ("Nitro", incl. Feast) | Ironwood | 1986 |
| I Fucking Forget | ("Famine At Dawn", "Metamorphosis/Afterimage") | 1985 |
| Bands that Will Make Money | ("Push") | 1986 |
| Scale 20 | (4 songs) | Amphetamine Reptile | 1989 |
| Super 2 | The Fall-Outs | Super Electro | 1992 |
| Super 2 | The Fall-Outs | (2,000 made) | Super Electro | 1992 |
| rd 1010-2 | 500 Miles to Glory | ("Don't Want the Sun [alt. Version]") | Red Devil Recordings | 1995 |
| MR 098 | 500 Miles to Glory | ("Don't Want the Sun [alt. Version]", reissue) | Man's Ruin | 1998 |
| rd 1010-1 | 500 Miles to Glory | ("Don't Want the Sun [alt. Version]") | Red Devil Recordings | 1995 |
| Lowlife | (incl. Bundle of Hiss) | Ironwood | 1986 |
| Good Livin'/Lighting Bar Blues/Breakin' the Law | (picture disc, "Breakin' the Law" is an instrumental Judas Priest cover) | Sympathy for the Record Ind. | 1993 |
| (split full-length with A Rancid Vat) | 1982 |
| DV-1 | Hoop Skirt/Loop Yarn | (compilation includesMudhoney, Mr. Epp) | Box Dog | 1990 |
| PEN09 | Deep+Heartfelt | (6 songs, Limited to 500, numbered) | Penultimate | 1989 |
| Love and Respect | Penultimate | 1991 |
| SP 87 | Masters of War/My Life with Rickets | ("The Freewheelin' Mark Arm", some on red vinyl) | Sub Pop | 11/90 |
| 6 Songs | C/Z | 1986 |
| 9/1/85 | Deep Six | (2000 made, "Scared", "Blessing the Operation", "Grinding Process", "She Waits") | C/Z | CZ 001 |
| 4/694 | Deep Six | (diff. cover than the lp) | C/Z/A&M | 6971 2400 2 |
| 10 Songs | C/Z | 1991 |
| 8 Songs | C/Z | 1986 |
| SP 192 | Bottle Up and Go/Cold Cold World (No Organ)/Out of Focus | (1st pressing on red vinyl) | Sub Pop | 1/92 |
| DEI 9037-7 | Circle 1/Shutdown | (a-side by The Holez) | Gasatanka Records | 1994 |
| ES7149 | Sugarman/The Pusher | (2000 copies) | Estrus Records | 3/7/00 |
| ITR 073 | That Trip You're On/6:10 Pheonix | In The Red Records | 9/00 |
| SP 129 | Clean as a Broke-Dick Dog | Sub Pop | 2/1/92 | |
| ES1269D | Electric Children | Estrus | 4/4/00 | |
| ...And One Really Nervous Guy | (live recording from 5/29+30/00 shows) | Lance Rock Records/TMQ | 2002 | |
| BMR104 | Gabriel's Horn | Birdman Records | 2/25/08 |
| SP 129 | Clean as a Broke-Dick Dog | (1st 2,000 on gold vinyl) | Sub Pop | 2/1/92 |
| ES1269 | Electric Children | (1000 copies, 180 gram vinyl) | Estrus | 4/4/00 |
| SP 129 | Clean as a Broke-Dick Dog | Sub Pop | 2/1/92 |
| SPCD 31/186 | Revolution Come and Gone | (incl. tracks by Mudhoney, TAD, Beat Happening, Hole) | Sub Pop Ger. | 1993 |
| SPCD 31/186 | A Small Circle of Friends | ("Shutdown") | Wind Up | 8/27/96 |
| ES 1275D | Estrus Apeshit Rock Sampler (Vol. 2) | ("The Empty Place") | Estrus | 8/8/00 |
| MSRC-0001 | The Las Vegas Shakedown Compilation | ("Thirteen Nights") | Masked Superstar | 2000 |
| SPV2 | Sub Pop Video Network Program 2 | ("Bottle Up and Go", includes Mudhoney) | Sub Pop | 1991 |
| 6-1 | The New Original Sonic Sound. | Book Records | 10/00 | |
| 1+2CD132 | The New Original Sonic Sound. | (Released in Japan) | 1+2 Records | 2/2/01 |
| Flyin' Traps | ("What Happened to Walter?") | Hollywood | 1997 |
| Super 1 | Sad and Lonely | (2,000 pressed) | Super Electro | 1992 |
| Velvet Goldmine Soundtrack | ("T.V. Eye") | Polygram | 11/3/98 |